Overview

This comprehensive guide covers testing nf-core components using nf-test. This guide provides everything needed to create robust, maintainable tests for modules, subworkflows, and pipelines, from writing your first test to implementing advanced patterns.

Guide structure

Getting started

  1. Installation - Setting up nf-test in your development environment
  2. Project setup - Configuring your nf-core pipeline repository for testing with nf-test

Component Testing

  1. Testing modules - Testing individual nf-core modules
  2. Testing subworkflows - Testing nf-core subworkflows
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