compare detected splice junctions to reference gene model
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam:file
the alignment in bam format
*.{bam}
bed:file
a bed file for the reference gene model
*.{bed}
pdf
meta:file
Junction saturation report
*.pdf
*.pdf:file
rscript
Junction saturation R-script
*.r
*.r:file
versions
versions.yml:file
File containing software versions
versions.yml
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
