Description

Generate statistics from a bam file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bam:file

the bam file to calculate statistics of

*.{bam}

Output

name:type
description
pattern

txt

meta:file

bam statistics report

*.bam_stat.txt

*.bam_stat.txt:file

bam statistics report

*.bam_stat.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

rseqc
GPL-3.0-or-later

RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.