Converts a GFF/GTF file into a proper GTF file
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gff:file
Annotation file in GFF3/GTF format
*.{gff, gtf}
output_gtf
meta:file
Annotation file in GTF format
*.{gtf}
*.agat.gtf:file
log
Log file of the conversion process
*.{log}
*.log:file
versions
versions.yml:file
File containing software versions
versions.yml
AGAT is a toolkit for manipulation and getting information from GFF/GTF files
